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Cell Biology
Course Number:  110841
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genes

dr d
"To understand human biology 
one must understand cell biology
and the workings of genes."

Last Update: 2 / 23 / 08
 
Trimester  2
2007-2008

Bergen County
Academies

with 
Dr. Don DeWitt
in room 227

2 classes / week: T & F
3 mods / class (25-27)


Contact me at: 
mail



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**********NOTE: This course will not run in the near future.**********

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Cell Biology Overview:
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Introduction
 
The Amazing Cells sequence is a series of ELECTIVES for any student at Bergen County Academies who is seeking an in-depth exploration of the concept of the structure and function of genes (Cell Biology), and the application of molecular genetics to the study of viruses (Virology) and immunology (Immunology).  These three courses are descendants of the coursework in the curriculum of Advanced Biology for senior AAST / AEDT students from 1995 - 2003.

Cell Biology
(a.k.a. Molecular Genetics)

Through the course of study about molecular genetics, each student becomes acquainted with the concept of a gene, at the DNA level.  In this effort the student studies:
  • the relationship between the structure of a chromososme and the location of genes;
  • the chemical structure of DNA and RNA; and
  • the connection between DNA, RNA, protein synthesis and the way in which proteins affect the phenotype of the originating gene.
  • the history of the discovery of the structure of DNA
  • the use of technology is analyzing DNA samples
This material is found in 1) chapters 16, 17, 19 and 21 in the biology text , 2) the book: The Double Helix by James Watson,  3)  additional lecture handouts from the instructor, and 4) videos shown in class including Revolutions, The Immortal Thread, Race for the Double Helix, Secret of Photo 51 and Accidents of Creation.
gattaca

Do you know what
these letters represent?



The Secret of Life
Supplemental lectures are presented via videotape using the 8-hour series: The Secret of Life by Dr. David Suzuki.
R
During the viewing of two of the videotapes, we employ a cooperative learning approach in which a student is assigned three to five questions.  Thus during the video, a student does not need to focus on every question, and can enjoy the show. However, in the following class period, each student presents the questions and answers to the class.  Every student can then obtain all of the important information from the video. Each student then uses this information in their preparations for take-home and in-class assessments.

The tapes used in Cell Biology are:
  • The Immortal Thread
  • Accidents of Creation
david suzuki
David Suzuki is an award winning scientist, environmentalist, and broadcaster. His television appearances, explaining the complexities of the natural sciences in a compelling and easily understood way, have received consistently high acclaim for over thirty years. 
(See The Nature of Things.)

Recently he retired as an Asst.-Full Professor in Zoology at University of British Columbia where he enlightened students from 1963 - 2001. He is also the founder of the David Suzuki Foundation, the narrator on a new TV 4-part series The Sacred Balance and writes a weekly column Science Matters.


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Race for the Double Helix (a.k.a. Life Story)
A unique 1987 film will be viewed to explore the history of the discovery of DNA.  The film is The Race for the Double Helix (a.k.a. Life Story)and stars Jeff Goldblum. It is the story of the diligent research, creative analysis, and perseverance of James Watson, Francis Crick, Maurice Wilkins and Rosalind Franklin that led to the discovery of the structure of DNA. 

The film was produced and directed for BBC Television by Mick Jackson and written by William Nicholson with Jeff Goldblum starring as James Watson, Tim Pigott-Smith as Francis Crick, Alan Howard as Maurice Wilkins, and Juliet Stevenson as Rosalind Franklin. This film was produced by the BBC in 1987 and was originally shown on the A&E network in the U.S.  LIFE STORY has been awarded the following: (ref)
* ACE Award 1988 - Best Picture
* BAFTA 1987 - Best Television Drama
* New York Film Festival 1987 - Best Television Film
* Locarno Film Festival 1987 - 1st Prize, Television Movie Section
* Midas Award, 2002 - European Union, European Public Awareness of Science (ref)


An accompanying reading assignment will be the book: The Double Helix: A Personal Account of the Discover of the Structure of DNA by James Watson. 
the double helix
(Watson and Crick's autographs.)
life story

Jeff Goldblum as James Watson contemplates 
the beauty of the structure of DNA with his 
colleague Francis Crick played by Tim Pigott-Smith.


For educators searching for this film, it is 
still available in VHS or PAL format from:
BBC Learning Studies
and is listed as Lifestory: A Double Helix
(Item #17577)
or in VHS or DVD from
Films for the Humanities & Sciences
and is listed as Double Helix
(Item #JGN7453)

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Secret of Photo 51
A new addition to our video based education is the 2003 offering from NOVA called Secret of Photo 51.  It is an excellent second view of the controversies surrounding just exactly who did what in the elucidation of the structure of DNA and fits perfectly into our main project for this course called Who Did What? (see below)

For those of you who have been craving more information about Rosalind Franklin, you wish has come true.

The website at pbs.org can be found at Photo 51.
photo 51 tape


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dna from the beginning A new resource explaining how Watson and Crick and colleagues determined the structure of DNA can be found at DNA From The Begninning at the DNA Learning Center of The Cold Spring Harbor Laboratory.

Who Did What? Project

The outgrowth of these resources in our classroom will be reflected in the assessment project entitled Who Did What? in the discovery of DNA structure. (See Assessments)

Current Events

Because the topic of molecular genetics is a hot area of biology and is changing daily, each student is required to maintain a portfolio of six current events articles with one article due approximately every ten days throughout the trimester.  It is expected that at least three of the articles will be found using the internet.  (See Assessments)


To obtain a black on white PRINTABLE version of this page, click PRINT.

Student Objectives:
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Upon the successful completion of the study of molecular genetics during Cell Biology, the student will be able to:
 

1.
demonstrate an understanding of the structure of chromosomes by explaining:

a. where chromosomes are found in cells

b. how a chromosome is constructed

c. how chromosomes are classified






2. describe how nucleic acids are polymers of monophosphorylated nucleosides






3. describe the structure of a nucleoside which is a pentose sugar with a nitrogenous base attached at the 1’ carbon of the sugar.






4.
explain that ribonucleic acids (RNA) are polymers of monophosphate ribose-based nucleotides






5.
explain that deoxyribonucleic acids (DNA) are polymers of monophosphate deoxyribose-based nucleotides






6. describe the structure of the various single-stranded RNAs such as:

a. heteronuclear RNA (hnRNA)

b.
messenger RNA (mRNA)

c.
ribosomal RNA (rRNA) or

d.
transfer RNA

e.
small nuclear RNA (snRNA)






7. describe the antiparallel nature of the structure of double-stranded DNA 






8. explain that each chromosome in the nucleus of a     eukaryotic cell contains one molecule of double-    stranded DNA that consists of 1000s of nucleotides






9. explain that one chromosome of DNA contains     multiple sections called

a. genes which carry the code for the    production of some type of RNA molecule,
  or

b. junk DNA which have no apparent function (at least as of today… but that is changing).






10. explain that some genes carry information to make

a. ribosomal RNA (rRNA)

b. transfer RNA (tRNA)

c. heteronuclear RNA (hnRNA






11. 
explain how the synthesis of RNA from a DNA gene (which is called transcription) works.






12. describe how a trio of DNA bases represents a trio of bases in mRNA which represents an amino acid in a translated polypeptide.






13. compare the structure of genes found in eukaryotic and prokaryotic cells.






14. explain how messenger RNA is used to carry the instructions for a polypeptide from the nucleus to a ribosome






15. demonstrate how the genetic code is involved with protein synthesis.






16. describe how triphosphate ribonucleotides are used to provide the needed energy and substrate to
synthesize RNA






17. explain that transcription of DNA entails a complementary copying rather than an exact copying in the transcription to RNA based on the  rule that a pyrimidine is copied into a purine with the exact rule that:

a. A becomes U,

b. T becomes A,

c. C becomes G,

d. G becomes C.


18. 
describe how heteronuclear RNA (the primary transcripts) are altered to become functional messenger RNA in the process known as
post-transcriptional processing.






19.
describe how polypeptides are altered to become functional proteins in the process known as
post-translational processing.






20. 
describe the difference between the human genome,  individual genetic makeup, a genetic sequence and the genetic code.






21. 
explain what the Human Genome Project is and  discuss several pros and cons.






22. explain how polypeptides are processed to become functional proteins.






23.
explain how a gene can have different allelic forms (at the molecular level).






24.    show how different allelic forms of genes can change the phenotype of the cell within which the gene is located.






25.    explain the importance of control genes (a.k.a., homeotic genes and how they have contributed to the difference between humans and chimpanzees,
or the difference between two- and four-winged insects.






26.    show how the Polymerase Chain Reaction (PCR) is used to analyze small samples of DNA.






27. 
reflect on the difficulties associated with the discovery of the structure of DNA including the role of prejudice in science with regard to women
   
chromosome map
Human Chromosomes 1-22, X & Y (*1)

chromosome 6 book

The location of genes on certain 
chromosomes can get critical!



ideogram
On June26, 2000, the Human Genome Project 
reached an historical point.  To check on its progress, 
click on the graphicabove to visit the NCBI Human 
Genome Sequencing website.

































































































4 winged fly

Manipulation of the control gene for wings 
has created a four-winged fruitfly. Normal 
fruitflies use only two wings.

Could a mutation in chimpanzee DNA have
resulted in the doubling of the control gene 
for brain size? 

Using the video The Meaning of Life
we will consider this idea with the help of
Dr. David Suzuki. 

To obtain a black on white PRINTABLE version of this page, click PRINT.

Student Assessments:
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Internet sites
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Information about assessments can be found on the Cell Bio Assessments page.



Additional Information:
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Textbooks: 
  • Paper textbook 
    • As our primary resource, we are using Biology 6th ed. 2002  by  Neil Campbell and Jane Reece
    • This book is a college level or AP level text book that is used by many colleges throughout the world for Introductory Biology courses.
.
textbook

Click on the textbook 
to visit the publisher's website.

  • Supplemental book:
    • An accompanying reading assignment will be the book: 
      The Double Helix: 
      A Personal Account of the Discover 
      of the Structure of DNA
      by James Watson.
thedoublehelix
Other resources:
  • videos
    • The Secrets of Life videotape series, narrated by Dr. David Suzuki
      • The Immortal Thread
      • Accidents of Creation
    • Revolutions from the series Connections2 
    • Double Helix, starring Jeff Goldblum as James Watson
    • Secret of Photo 51 from NOVA / WGBH
  • internet
    • See below


Internet resources:
These links have now been moved to their own page at:
INTERNET


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References:
*1.  Graphic borrowed from Human Chromosome Launchpad and adapted from article published by Time, Inc. Used by permission (Philip Elmer-Dewitt, "The Genetic Revolution," Time, January 17 1994, 46-55).
dna strand