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Chromosome Banding
Molecular Biology 5
(v1 as of 1/8/06)

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As you discovered in Chromosome Classification, metaphase chromsomes can be classified via several methods, one of which , is by their banding patterns when stained prior to microscopic examination.

Certain chemical treatments of mammalian chromosomes yield differentially stained regions on chromosomes. The patterns obtained depend on the treatment used. 

C-banding stains centromeres. 

R-banding is the reverse of C-banding and stains non-centromeric regions in preference to centromeres. 

G-banding is obtained with Giemsa stain, but can be produced used other stains. It yields a series of lightly and darkly stained bands (See Figure 1). G-banding drawings as seen here are called IDIOGRAMS, which are explained in detail in How do you read a Human Chromosome Idiogram?

The dark bands have been found to contain more Adenine and Thymine bases while the light bands have more Guanine & Cytosine bases in the DNA. A common misconception is that bands represent single genes, but in fact the thinnest bands contain over a million base pairs and potentially hundreds of genes. For example, the size of one small band is about equal to the entire genetic information for one bacterium.

Q-banding is a fluorescent pattern obtained using quinacrine for staining. The pattern of bands is very similar to that seen in G-banding.

More details on C-, R-, G- and Q- banding procedures with examples may be found at this U. of Washington Department of Pathology website.

Figure 1
X chromosome
G-banding 
Idiogram

The reproducible patterns of light and dark bands serve as signposts to identify different positions on a chromosome.

The patterns of G- and Q- bands on a chromosome are sufficiently unique to allow that chromosome's unambiguous identification. The best banding is obtained with prophase chromosomes since these have not yet fully condensed 

A size-organized set of photographs of banded chromosomes is called a karyotype and can be used to screen for chromosome rearrangements. Although Figure 2 is not a karyotype, but a idiogram made of drawings of the chromosomes rather than photographs of chromosomes taken from a microscope.  To see the more realistic karyotype for a female human, scroll down to figure 3.

G-, Q-, and R- bandings are not observed with plant chromosomes. 
 
 
 

  Figure 2
Idiograms for a human male
showing metaphase chromatid
pairs for each chromosome

Figure 3: Human male karyotype taken from microscopic examination of metaphase chromosomes.
References
Background info: http://opbs.okstate.edu/~melcher/MG/MGW1/MG11322.html
Genes V, by Benjamin Lewin, Oxford University Press, Oxford, England,1995, p782
The Karyotyping Activity, The Biology Project: Human Biology, U. of Arizona
Chromosome Idiogram source:  http://www.gdb.org/hugo/
Chromosome 1-22 Idiogram source: http://raven.umnh.utah.edu/units/karyotyping/normal.html
Photographic Karyotype source: http://raven.umnh.utah.edu/units/karyotyping/xy.html

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