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Molecular Biology 1-5
Course Numbers 110631, -41, -51, -61, & 110681
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insulin
dr d
"Insulin is a protein hormone made from two polypeptide chains (pink and blue). The white sphere represents a zinc ion.  Insulin is essential in the maintenance of normal blood glucose levels.  Defects in this control system occur in the disease known as diabetes mellitus."
INTRODUCTION
2006-2007

Bergen County Academies

iwantyou
with 
Dr. Don DeWitt
in room 227 (old 242)

Contact me at: 
mail

Last Update: 6 / 24 / 06






Organic chemistry is the study of carbon compounds.
 Biochemistry is the study of carbon compounds that crawl.













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Course Description:
This series of courses is an ELECTIVE opportunity for any BCA student and may be taken during the sophomore through senior year.

The Mol. Bio. 1-3 sequence is usually taken as three consecutive trimester independent courses during the same year (Tri. 1: Mol. Bio. 1; Tri. 2: Mol. Bio. 2; and Tri. 3: Mol. Bio. 3).  Each course will be shown on the student transcript as a separate course.   I will allow students who have completed trimester 1 of Anatomy and Physiology to enroll in Mol. Bio. 3, 4 or 5 without prior enrollment in Mol. Bio. 1 and 2 because the A&P, trimester 1 curriculum is an introduction to biochemistry.  Mol. Bio. 4 is offered  during Trimester 1 with only one section offered.   Mol. Bio. 5, runs during trimester 2.
At any Mol. Bio. website, you will find a symbol for the SiteMAP sitemap which if clicked will take you to a very useful index for all of the Mol. Bio. courses and any part within each course.  Try it, use it, be happy!

Warning:  Thes are very demanding courses and should be taken by students who are very serious about the following topics.  The material presented in these courses are explored at a level of sophistication equal to that found in college.  It is advisable that all pre-pre-med / vet / dental students take these courses to enable them to be comfortable with the topics when they are required to study them in college.  In addition, any student who is interested in cellular or molecular biology, biochemistry or genetic engineering should take this sequence. DO NOT TAKE THIS COURSE JUST BECAUSE IT LOOKS GOOD ON YOUR TRANSCRIPT OR YOU THINK THE INSTRUCTOR IS A GOOD TEACHER.

The most valuable aspect of the Molecular Biology Experience, according to BCA alumni, has been the comfort level that it gives the student when they meet the material again. Instead of panicking, these students relate that the college course has been much easier to withstand.  Many of them have become teachers for their clueless fellow students.

The Molecular Biology Experience is offered as shown below: 

Trimester 1
Trimester 2
Trimester 3

Mol. Bio. 1
(2 sections)
Mol. Bio. 2
(1 section)
Mol.  Bio. 3
(1 section)
Mol.  Bio. 4
(1 section)
Mol.  Bio. 5
(1 section)

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Pre-requisites:
  • Mol. Bio. 1: At least concurrent enrollment in 10th grade Biology (AAST / AEDT students) or satisfactory completion of a one year 9th grade biology course (ABF / ACAHA / ATCS / AMST / AVPA) is required. The completion of at least one year of chemistry is highly recommended.
  • Mol. Bio. 2: Mol. Bio. 1
  • Mol. Bio. 3: Mol. Bio. 1 and 2 ... or A&P Trimester 1
  • Mol. Bio. 4: Mol. Bio. 1 and 2, or 3, or A&P Trimester 1, or Biochemistry
  • Mol. Bio. 5: Mol. Bio. 2, 3, or A&P Trimester 1, or Biochemistry
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Course Foci:
    • carbohydrates (Mol. Bio. 1)
    • proteins (Mol. Bio. 1 & 2)
    • nucleic acids (Mol. Bio. 1 & 2)
    • lipids (Mol. Bio. 2)
Although it is possible for a student to drop out of the Mol. Bio Experience after Mol. Bio 1, it is recommended that Mol. Bio. 2 be completed.  Mol. Bio 1 has as its focus, carbohydrates and proteins.  Assessment procedures are listed in the following section about Assessments
  • Mol. Bio. 3 is a dramatic change from learning about structure of molecules to their role in metabolism. The study of metabolism  makes this course a different course because it deals less with descriptive biochemistry and more with how the molecules are used in energy processing. Therefore, Mol. Bio. 3 has, as a focus, the metabolic pathways needed to convert food to a useable form (ATP) that cells can use to do their work. This effort thus requires the study of anaerobic and aerobic metabolism.  The assessment process includes take-home and in-class exams. (See Assessments below.)  Photosynthesis is not covered in this course.  Those students who wish to study this topic, should plan to take Advanced Placement Biology in their senior year where the same textbook is used (although a never edition.)
  1. the digestion and absorption of food (Gastrointestinal System) and
  2. human Reproductive System.
The endocrine system uses protein, peptide and steroid hormones to control the activities of these two complex systems.  An understanding of amino acids, proteins and steroids is therefore an essential foundation for this course.
  • Mol Bio 5: The Life and Death of Proteins

    The addition of this course is a result of shadowing students in college biology programs who have recently graduated from BCA. The topics covered in Mol. Bio. 5 focus on difficult material which I feel should be introduced at BCA in order to minimize the discomfort that may come if a student is required to wrestle with these topics for a first time in college. Mol. Bio. 5 is open to anyone
    • a) who has taken Mol. Bio. 3,
    or has completed
    • b) Anatomy and Physiology,
    • c) Anatomy and Physiology (trimester 1), or
    • d) Biochemistry (GLE) with Dr. DeWitt.

In Mol. Bio. 2, (or A&P or Bio. Chem.) we explored proteins and protein synthesis is cells, but we did not dwell on what happens to proteins after they are initially made at ribosomes.  Mol. Bio. 5 explores the multifaceted lives of proteins, and finally the deaths of proteins in lysosomes or proteasomes.

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Assessments:
  • During Mol. Bio. 1 and Mol. Bio. 2, each student will be required to write three ten-page research papers: A Useful Carbohydrate, One of Life's Great Proteins and A Most Awesome Lipid. In addition, three major examinations will be taken.  Assorted smaller projects will complete the assignments including a textbook chapter outline, and crossword puzzles. Although the material about proteins and nucleic acids is covered late in Mol. Bio. 1, the assessment is not given until early in Mol. Bio 2. 
  • In Mol. Bio. 3, no research papers are required. Three major in-class examinations will be taken, three take-home exams will be worked on and one crossword puzzle will be attempted.
  • In Mol. Bio. 4, assessments include in-class and take-home exams, current event reviews, and a research paper on a disease of choice.

  • In Mol. Bio. 5, assessments include a research paper entitled, My Favorite Nobel Prize, current events reviews, one in-class exam, one take-home exam, and a teaching project.
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Resources:
Paper Textbooks:

1. For Mol. Bio. 1-3
we are using:
Biology, 4th ed.
by Neil Campbell, 1996
This book is an older edition of a standard freshman biology college textbook. We only use one chapter in the book.  Most of the resources for assessments comes from in class notes known as "panels".


textbook
2. For Mol. Bio. 4 we are using:

Human Physiology: The Mechanisms of Body Function,

8th ed. by Vander, Sherman and Luciano, 2002

This book is a classic college level physiology text used by 1000s of students since the first edition was published in 1977.  The authors were Dr. DeWitt's graduate program teachers who taught him how to teach physiology.

textbook

3. For Mol. Bio. 5 we are using:

Essential Cell Biology: 
An Introduction to the Molecular Biology of the Cell

by 

Bruce Alberts, Ph.D., Dennis Bray, PhD, Alexander Johnson, Ph.D., Julian Lewis, D. Phil., Martin Raff, M.D., Keith Roberts, Ph.D. and
Peter Walter, Ph.D. 
For information about them: AUTHORS
The book is written especially for undergraduates in biological sciences, but its content can be easily understood and absorbed by advanced secondary school students who need a basic introduction to the essential topics in modern biology.


Click on the book for more 
information from the publisher 
including the Table of Contents.
dr d
Digital textbook (eTexts):

Your most important resource is the special computer-based digital textbook (eText) written especially for this course: 

The Biochemistry and Functions 
of the Molecules of Life 
by Don DeWitt, PhD

  • MOL. BIO. 1

For this first course, you will be responsible for chapters 1-4 which cover the chemistry and function of carbohydrates and proteins. 

These chapters are available individually on CD obtained from the instructor.  They are also available on every Macintosh computer in room 227.

These chapters can be viewed by using Adobe Persuasion on Mac or PC platforms. A Persuasion Player program must also be used to run these chapters.  Persuasion is an older program that is similar in format to Microsoft's PowerPoint.  It was originally developed by Aldus but Adobe bought Aldus and then ceased development of Persuasion.  In the meantime, PowerPoint gained supremacy. Unfortunately there is no Persuasion-to-PowerPoint converter program so we continue to use Persuasion which still works on both platforms.

FOR ALL ASSESSMENTS in this course, it is ASSUMED that you have digested the contents of the associated chapters. 

Chapter 1: Carb Chem
carbs

Chapter 2: Carb Function
carbs

Chapter 3: Protein Chem
proteins

Chapter 4: Protein Function
proteins


  • MOL. BIO. 2

For Mol. Bio . 2, you will be responsible for chapters 3 - 9  on Proteins, Nucleic Acids and Lipids. 

In the study of proteins, the process of protein synthesis is intimately linked to the third class of molecules known as nucleic acids which include DNA and RNA.  Chapters 5 and 6 are under development at this time but are also available in webpage format which may be found at the Download Center. Most of this material will be tested during the first month of Mol. Bio. 2 on the Proteins/Nucleic Acids Exam.

The major topic of study in Mol. Bio. 2 is about the fourth type of Molecule of Life: the Lipids class of molecules. This class is subdivided into:

Chapter 7: Fats, Membrane Lipids, and Waxes, 
Chapter 8: Terpenes

Chapter 9: Steroids

Our focus will be on chapters 7 and 8.  The steroid information in chapter 9 can be useful for the Lipids Research Paper however.

In general, there can be more than 100 pages per chapter and there is more information in these programs than is expected on an in-class exam. However the advanced information will be useful for your take-home questions, research papers, and the in-class crossword puzzles which are taken open-book style. 

These programs are available for student use ONLY and should not be given to any other person.


Chapter 7: Lipids: Fats, etc

lipids: fats

Chapter 8: Lipids: Terpenes
lipids: terpenes

Chapter 9: Lipids: Steroids
lipids: steroids


  • MOL. BIO. 3

During Mol. Bio. 3, no eTexts will be used.

During this advanced course, class notes and the paper textbook are THE essential resources.


  • MOL. BIO. 4

Useful eTexts for this course are the Lipids (Chapters 9)  chapter on Steroids.

However, your textbooks and class notes are your major survival resources.
Chapter 9: Lipids: Steroids
lipids: steroids

  • MOL. BIO. 5

Useful eTexts for this course are the Proteins (Chapters 3-4) chapters. They are available through the MolBio Download Center.


However, your textbooks and class notes are your major survival resources.

Chapter 3: Protein Chem
proteins

Chapter 4: Protein Function
proteins


Internet resources: 
A multitude of information can be found on the webpage for each trimester as listed below.  It is easier to access those resources via the Mol. Bio. Website Map. sitemap

For more information about the course, including assignments and due dates, please click on one of the choices listed below:



Click below to go somewhere other than right here.
dr d
Dr. DeWitt
Websites
Course
Info
Formatting
Rules
Grading
Policy
other
Attendance Policy
Printable
Version
Mol.
Bio.
1
Mol.
Bio.
2
Mol.
Bio.
3
Mol.
Bio.
4
 
Mol.
Bio.
5
Mol. Bio.
Website Map
To access Assignment Due Dates,
move to the appropriate course (1 - 5) shown above.

To obtain a black on white PRINTABLE version of this page,
click on the upper right Printable Version button in the menu above.


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